Arabidopsis thaliana Tissue Co-expression Network Compendium v1

Summary
Annotations
Relationship
Cross Reference
Publication
Networks
Annotations
This record has the following annotations.
TermNameDefinition
OBI:0200126network graph constructionA network analysis in which an input data set describing objects and relationships between objects is transformed into an output representation of these objects as nodes and the relationships as edges of a network graph.
Publication
Ficklin SP, Feltus FA. A systems-genetics approach and data mining tool to assist in the discovery of genes underlying complex traits in Oryza sativa. PloS one. 2013; 8(7):e68551.
Summary
Resource Type
Analysis
Name
Arabidopsis thaliana Tissue Co-expression Network Compendium v1
Description

For this project all available Affymetrix micorarrays for Arabidopsis thaliana from the platform NCBI GEO GPL198, were manually organized into tissue specific groups. Each group underwent network construction.
Method
RMTGeneNet
Date Performed
Monday, November 12, 2012 - 16:00
Data Source
Source Name
: Tissue separated GPL198 samples from NCBI GEO (Jul 25, 2011)
Networks
There are 10 networks.
IdentifierNameNetwork TypeOrganism
ATH_Global_v01ATH_Global_v01coexpressionArabidopsis thaliana
ATH_Aerial_v01ATH_Aerial_v01coexpressionArabidopsis thaliana
ATH_Rosette_v01ATH_Rosette_v01coexpressionArabidopsis thaliana
ATH_Root_v01ATH_Root_v01coexpressionArabidopsis thaliana
ATH_Seedling_v01ATH_Seedling_v01coexpressionArabidopsis thaliana
ATH_Whole_v01ATH_Whole_v01coexpressionArabidopsis thaliana
ATH_Seed_v01ATH_Seed_v01coexpressionArabidopsis thaliana
ATH_Leaf_v01ATH_Leaf_v01coexpressionArabidopsis thaliana
ATH_Flower_v01ATH_Flower_v01coexpressionArabidopsis thaliana
ATH_Shoot_v01ATH_Shoot_v01coexpressionArabidopsis thaliana