Import of dbSNPs for Arabdidopsis, Zea Mays and Oryza sativa

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Summary
Resource Type
Analysis
Name
Import of dbSNPs for Arabdidopsis, Zea Mays and Oryza sativa
Description

SNPs were downloaded in bulk from the NCBI dbSNP FTP repository for Arabidopsis thaliana, Oryza sativa and Zea Mays in XML format.  The XML was coverted to FASTA formatted files containing the SNP and 5' and 3' flanking sequences.  These sequences were aligned to the TAIR10, Rice MSU v6.0, and the MaizeSequence.org B73 genome assemblies respectively using blat.  Only SNPs that mapped uniquely along the full length of the flanking sequence were kept and uploaded to this database.

Method
manual download & processing
Date Performed
Friday, December 28, 2012 - 16:00
Data Source
Source Name
: NCBI dbSNP