Network Projects
| Name | Method | Description |
|---|---|---|
| Arabidopsis thaliana GIL-Hive Co-expression Network v1 | RMTGeneNet |
A Gene Interaction Layer (GIL) Hive is a collection of networks constructed after clustering of input samples. Each cluster is then used to create a unique network. For this project a GIL-Hive was constructed for Arabidopsis thaliana using all available Affymetrix samples from the GPL198 platform at the time. This resulted in 90 distinct networks. |
| Arabidopsis thaliana Global Co-expression Network v1 | RMTGeneNet |
A gene co-expression network for Arabidopsis thaliana. The network was constructed using all public Affymetrix microarrays from the NCBI GEO platform GPL198 at the time. |
| Arabidopsis thaliana Tissue Co-expression Network Compendium v1 | RMTGeneNet |
For this project all available Affymetrix micorarrays for Arabidopsis thaliana from the platform NCBI GEO GPL198, were manually organized into tissue specific groups. Each group underwent network construction. |
| Oryza sativa GIL-Hive Co-expression Network v1 | RMTGeneNet |
A Gene Interaction Layer (GIL) Hive is a collection of networks constructed after clustering of input samples. Each cluster is then used to create a unique network. For this project a GIL-Hive was constructed for Oryza sativa using all available Affymetrix samples from the GPL2025 platform at the time. This resulted in 25 distinct networks. |
| Oryza sativa Global Co-Expression Network v1.0 | WGCNA + RMT |
A gene co-expression network was constructed for Oryza sativa using all public Affymetrix microarray samples available at the time. |
| Zea mays Global Co-Expression Network v1.0 | WGCNA + RMT |
A gene co-expression network was constructed for Zea Mays using all public Affymetrix microarray samples available at the time. |