Network Projects

The following network construction projects are available on this site. Click a project name to browse the network and any subgraphs.
Name Method Description
Zea mays Global Co-Expression Network v1.0 WGCNA + RMT

A gene co-expression network was constructed for Zea Mays using all public Affymetrix microarray samples available at the time.

Oryza sativa Global Co-Expression Network v1.0 WGCNA + RMT

A gene co-expression network was constructed for Oryza sativa using all public Affymetrix microarray samples available at the time.

Oryza sativa GIL-Hive Co-expression Network v1 RMTGeneNet

A Gene Interaction Layer (GIL) Hive is a collection of networks constructed after clustering of input samples. Each cluster is then used to create a unique network. For this project a GIL-Hive was constructed for Oryza sativa using all available Affymetrix samples from the GPL2025 platform at the time. This resulted in 25 distinct networks.

Arabidopsis thaliana Tissue Co-expression Network Compendium v1 RMTGeneNet

For this project all available Affymetrix micorarrays for Arabidopsis thaliana from the platform NCBI GEO GPL198, were manually organized into tissue specific groups. Each group underwent network construction.

Arabidopsis thaliana Global Co-expression Network v1 RMTGeneNet

A gene co-expression network for Arabidopsis thaliana. The network was constructed using all public Affymetrix microarrays from the NCBI GEO platform GPL198 at the time.

Arabidopsis thaliana GIL-Hive Co-expression Network v1 RMTGeneNet

A Gene Interaction Layer (GIL) Hive is a collection of networks constructed after clustering of input samples. Each cluster is then used to create a unique network. For this project a GIL-Hive was constructed for Arabidopsis thaliana using all available Affymetrix samples from the GPL198 platform at the time. This resulted in 90 distinct networks.