Network Projects

The following network construction projects are available on this site. Click a project name to browse the network and any subgraphs.
Name Method Description
TAIR10 Genes Manual download of TAIR10 genes

Manual download of GFF file from TAIR which includes chromosomes, genes, mRNA and UTRs. File obtained is found at TAIR FTP site

Maize B73 Genes Manual download from maizesequence.org

Gene predictios from the filtered set of the B73 Zea mays genome.  Sequences were downloaded from the maizesequence.org FTP site.

MSU v6.0 Oryza sativa whole genome download Manual Download
MSU v7.0 Oryza sativa whole genome download Manual Download
Functional Enrichment of A. thaliana Global, Tissue and K90 GIL networks In-house perl script

The Feltus-lab in-house enrichment Perl script (modeled after DAVID) was used for testing functional enrichment of InterPro...

Functional Enrichment of A. thaliana K90 GIL networks In-house perl script

The Feltus-lab in-house enrichment Perl script (modeled after DAVID) was used for testing functional enrichment of InterPro...

Functional Enrichment of A. thaliana Global v1.0 network In-house perl scrip

The Feltus-lab in-house enrichment Perl script (modeled after DAVID) was used for testing functional enrichment of InterPro.